rs48603877 SNP Detail

Summary

• ID
  rs48603877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65535629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAACAGA GGTTTGTGTT
  TCTGCCACCA ACATGTAGAG ATGGGATGCA GCTTATGAAC TTGACCCACA AAGAAAAGTT
  CAGGTGTAAA CTAAAGCTCT GCCTTCTAGA TCAGCTTTGT TGTTTTCTCA TTCAGTGCTT
  GGGATCTAAC CCAGGGCCTT ATACAAAACC CGTGCATACT AGGCACAAAC TTTAGCAAGG
  R
  AACCACATCT CCAGCTCCAA GTTCACCTAC CTCCTAATGA AAGGCAAGAG AAGAAGTAAT
  ACCCCTGGCC TATTATTTAT CACATACGAG GAGCTTTTCC ATGTACAAGG GCTAATTCTT
  TTTTTTTTTC CAGCTTTTTC AACCACTTTT TTAAATTAAA AAAAATTTTT TTATTTAGGT
  ATTTTCTTCA TTTACATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135252727	ENSMUSSNP5248618	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48603877					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65535629 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	1883 bp distal
Rr577713	regulatory region 577713	738 bp distal
Rr577714	regulatory region 577714	1422 bp proximal