rs48603188 SNP Detail

Summary

• ID
  rs48603188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145799646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT ATAGTTGGCA ACAACTTTTA
  Y
  GTTGCCCTGT CCTATGTTGA GACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147850479	ENSMUSSNP1040329	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320539033	CHEV_2_145783462	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48603188					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145799646 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	within coordinates
Rr566613	regulatory region 566613	687 bp distal
Rr566614	regulatory region 566614	within coordinates
Rr566615	regulatory region 566615	82 bp distal
Rr566616	regulatory region 566616	316 bp proximal