rs48602675 SNP Detail

Summary

• ID
  rs48602675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34284985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACAGCG GTGAGACTGC
  CTGCAGAGAC AGCGAGAGAC AAGTCAGCAG GAGGGACCAG AAGGAACACA GGAGTTCTTG
  GCTGTGCCTC TCTCAGGGAA GGGAAAATCA GCATAGACTC CAGGCTCAGA ATTGTTGCAC
  AGCTAGCTCT ATAAGCAAGC CAAGCGCAGC CTCCATCACT GCCCATTAAG TCCTTTTATC
  Y
  TCTCTCTGAA CATCATGTGT CCTCCGTGAG CCTTGCCTCA GCACATGTCT TGTCTCAGCA
  CAAGTGTCTA TCTCAGCCCG AGTCTGCAGA GTCAGCAAGA AACTGCAGCA CACCACCAGA
  AGTTTTTGGT GCATTTCTCT CTATGGAGTC CTGACAAATG CAGATCAACT ATGTGATGTA
  AGGTAGCCCA ATACATGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134764583	ENSMUSSNP7207112	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48602675					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34284985 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	936 bp proximal
Rr575113	regulatory region 575113	1218 bp proximal