rs48601677 SNP Detail

Summary

• ID
  rs48601677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATGGAG AAGACCTCAG
  GGCACTCACC CCCACTGCTT AGCTGTGTGA CCCTGGGCAG AAGAATTGAC ATCTCTGGGC
  TGCGGGGTTT GGCCTATGAA GTAAGGAGTG TGGCTAACTG CCTGGGCCTT GAGTTCATAA
  TGTTCTTTTC CCTTTCTGTC CACCATCCCC CTGGCAGCCT GAGTTTCTTG TGTTGATACT
  R
  ATGCCCTGAG CTCCCTTGAA CTCCAAAGCC TATTTCTTCA AGTTGCTCCG TGCCTCTTCA
  ACTTTGCCAT GCTCCCTTCT GCACCTGCCA AGTCTCCCCT GGGCACTTGC AGGACCCCCT
  CAGACATCAG ATTGATCACT CATTCCATTT TAGGCACAAT ATTGGTGGCT AGTCCTTTCT
  GAGAGCACAG TGCCTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147996081	ENSMUSSNP3916577	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48601677					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387767 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1389 bp upstream
Gm75218	predicted gene, 75218	1185 bp downstream
Rr567675	regulatory region 567675	1566 bp distal
Rr567676	regulatory region 567676	727 bp distal
Rr567677	regulatory region 567677	899 bp proximal
Rr567678	regulatory region 567678	1400 bp proximal