rs48599217 SNP Detail

Summary

• ID
  rs48599217
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100764366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGATGT GGCATGGGTA
  TTGGAGGACC ACATGGCTCA ACTCTACATC TTGGGCTCTT GGGAGCCTCA GTTAGGAAGA
  AAGCTAGCTC TCTTGAAGGG TTGACAGAGG AGAGGCATAG CAGTACCCTC CCCCCCCCCC
  CCCCCCGTTT CTTCAGTTCC AGCCATGATA GCCCAGCCAA ACCATGCTCC TGCCTACACT
  M
  GTGGCTGAGC CAAGGAATAA ATAAGATAAA AAGGGCAAGG TGACCTGTGG AGGGACTGTG
  AGCAAACAGA AGACCTTCCA GGATGACCGC TCGCTCGGTC AGGAGAAGCT TGGGAGTATG
  GTGTGTGCAC CTCTCTCCTA ACCCTGTTGG GAGAACTTAC AGTTAGGAGG CTGTTTGGTT
  CTGACGGCAT ACTTTGCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135541504	ENSMUSSNP3147660	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48599217					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100764366 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	334 bp distal
Rr581918	regulatory region 581918	1386 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron