rs48599024 SNP Detail

Summary

• ID
  rs48599024
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149737086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGACAAA ATCATTGAGA
  CATCTTGGGG ATCAGATTCA CAACTAAATT TACGGGGCAG ACGAGGGAGT ATTGGTGCAA
  GTCTTTAATT CCAGCTCGCA GGAGGTGGGG GCAGGCAGAA CTCTCCGGGT TCAAGGCCAG
  TTCCAAGCCA ACCAGAGCTA TGTGGTGGTC GCATTCCTTT TTAACTGTGG AGAAGTGATC
  W
  GAGCAAAACT ACAGGAGGAG GACTACTGTG TCTCCCTGGA ACTTTAGCCT TAGTGTTGTA
  AGTGGACACT TACCAGATTC GCTAATTTAA AAAAAAATGT ATCACTGAGT GAAATAATAT
  CCCAGTAAAC AAAATTAATG TAAATTTATC AATTCCTAGT TTTAAGGAAA GGGCTTTTAT
  GAGTTCATTG TAACTTTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145700926	ENSMUSSNP6344525	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48599024					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149737086 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1475 bp proximal