rs48598276 SNP Detail

Summary

• ID
  rs48598276
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141446507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTTCCT ATACAGACCA
  GGCTAGCCTA GATCTTCCAG CTCCACCTCA GCCTGCCTCT CAAGTGCTGG GATTAACAAT
  GCGAGTCACC ATGCTCAGCA CCCCAACAAA AACCTGAGAC AGGTTCTTAC CGCGCAGGCT
  CAGCTGTCCT GAGACCTGAA ATGGAGTCCA GGCTGGCCTT GAACTCTCAG TCTCAAATAT
  M
  AAACAAAAAC AATCAAAACC AAACTAACAC TCAATGTGCA AGTTATCCCT GGGTTATGAG
  GAATAAGTGA GCTGTGGCAG TCTTTATCCT TCTCTGTGTT ACAACCTTTC TAGCATAGCT
  ATTCAGCATT TACCAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAGAAACCA AAAAAACAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147742652	ENSMUSSNP5211592	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48598276					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141446507 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	91 bp upstream
Rr603862	regulatory region 603862	898 bp proximal
Rr603863	regulatory region 603863	1526 bp proximal