rs48597990 SNP Detail

Summary

• ID
  rs48597990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94447372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACATTCC AGAGGTCCTG
  AGTTCAATTC CCAGCACCCG CATGGTGGCT CACAGCCATC TGTAATAGGG ATCCGATGCC
  CTCTTCTGGT GTGCCTGAAG ACAGCAATAG TGTACTGACA GACATGAAAT AAATAAATAA
  ATAAATCTTA AAAAAAAAAA AAAAAAGAAC TGAATGTACC GTGTTGCTAG AAACTTGATC
  Y
  TAAGTAGTTG TCCTACAAAG CTGCAGTTAT GAGTCCTGAA GTAAATTTTA CATAGCAAGG
  GTCTCCTAAG TGAGGGTTTC TGTCATGTAA TACAAAAAAT TCCTGAATCA TGTCCAGCTG
  CTGAGCATCC ATAATTCTAG TAGGTTTATG TGTGGTTCTA AGACATCAAG AGAGACAATA
  ATATTTATGA AAGACAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147049668	ENSMUSSNP2457569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48597990					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94447372 () rs orientation: forward

Symbol	Name	Function Class
Rr595335	regulatory region 595335	1849 bp distal
Rr595336	regulatory region 595336	582 bp distal
Rr595337	regulatory region 595337	335 bp proximal