rs48594560 SNP Detail

Summary

• ID
  rs48594560
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137118031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG CAGAGGACAT GGGTTTGGTT
  T
  TCAGCACTCA TAAGGTGGCT CACAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147604111	ENSMUSSNP1325342	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321363494	CHEV_4_136946635	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48594560					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137118031 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	1992 bp upstream
Cpgi15128	CpG island 15128	1997 bp distal
Gm52681	predicted gene, 52681	within coordinates
Gm69281	predicted gene, 69281	1936 bp downstream
Rr377264	regulatory region 377264	1389 bp downstream
Rr602610	regulatory region 602610	1502 bp distal
Rr602611	regulatory region 602611	777 bp proximal