rs48590920 SNP Detail

Summary

• ID
  rs48590920
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGCACC TCAGGAGTTT
  CTCCAGAGGC CCAGCTCCCG ACTCTCACGT CCCTACAATT CCAGACCCCA TAATCCCGTA
  CCTTCTTTTT CTCTCAACTC CTATCTTCAG TTTCGTTCCT TCCCTCTCTT CTTGCTCCAG
  AACACCTTAT AACACAGTTA AACAGTTCAC TGACATAAAC CTGATCACAT GCCTTTGTCT
  S
  TAAACCCTAT TCTAGGTGAG ATGGTGCAGC TGAGGCAGGG AGACCTGAAG TCACCCAGCC
  ACTGATTTCC CAGGATTCTC CCTGGGCTTT CTGCTTGGCT TTAAGAACTA TAAATGAGTA
  TTTACAAAAA CAAAATGTTG CAGCATCTGA AGACAGGCTA GTTAAAACAA TTCTATTGCT
  ACATCACCTG CACAGCACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894255	NES15959619	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48590920					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894255	NES15959619	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	378 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1442 bp distal
Rr631669	regulatory region 631669	999 bp distal
Rr631670	regulatory region 631670	448 bp distal
Rr631671	regulatory region 631671	178 bp distal
Rr631672	regulatory region 631672	275 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	458 bp upstream
Tssr1872	transcription start site region 1872	1473 bp upstream
Tssr61255	transcription start site region 61255	1509 bp upstream
Tssr61256	transcription start site region 61256	1028 bp upstream
Tssr61257	transcription start site region 61257	557 bp upstream
Tssr61258	transcription start site region 61258	452 bp upstream
Tssr61259	transcription start site region 61259	384 bp upstream