rs48590648 SNP Detail

Summary

• ID
  rs48590648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58789910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATAAGCT ACAGTGTGGT GGGAGTGTGG ACTTCAGAAG
  CGCAGAGTGT TTCAAAAGCA TGTTGATAGG GAGTTTCAAC ACAGTATTTA GATAAGCGGT
  R
  TTCTCTTTGA GAATTTCATT GGGTTTATAT ATTGCACAGT CTTCCTAACA TTCCTTCATG
  TCATATTGAA AGAGTTGTTG CTGTTTGCTT AGGCAGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135210140	ENSMUSSNP4086673	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320783885	CHEV_3_58686411	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48590648					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58789910 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	within coordinates
Rr577289	regulatory region 577289	380 bp proximal
Rr577290	regulatory region 577290	967 bp proximal