rs48590058 SNP Detail

Summary

• ID
  rs48590058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124020168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACTTTAC CACAAAATAA
  TAAGTTTAAA TCACATCTTC ATGAACAAAT ACTTTCTTCT CAAACAAAAA GTCAGCATCT
  ATCATGATGA ATTTTGAATC ATACTTGTGT TGGAGATAAG AATATTAGCT CTGATACAAA
  TATTGATTAC TCGAGGTCAA CTTTAAGAAA TTACTAACAA TTCTTGCTAA CATACAAGAA
  Y
  GTGGACTTGC AGGATTTAGA GGCACACCTA GCCTATCATC ATTTATTTTT GTGCTTGAAA
  CAAACATAAA ATCATGAGCA CTCTAGACTA TTAGCCAAGA CAAACATATT TTGTCAATTA
  TAATGCCCTT TAAAAATTTA AAACTGTGTT TATTTTATGT TTTTCTTATG TGTTTTATGC
  TTGTAGTTTT TGCTGATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320926418	CHEV_3_123929437	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48590058					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124020168 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	319 bp distal