rs48589910 SNP Detail

Summary

• ID
  rs48589910
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCCTGC CCCAACGGAT
  GGAGCACCGT GGAATAGTTG TCTCAGCTTT GAAAACACAG TGATACTGGA TTATAATGAT
  GGGCAGAGAG AAACGAACAG CTTTCAACCC AGCCTGGCCC GTGTGGCCCA TGTGGCCCGT
  GTGGCCCGGC GTAAAAAGGT GGTTTACATC AGCTTTTTGG GTCCAAAGGG AGAGGAGGGG
  G
  GCAGTGAATG GAATGCTGGG ATAGGCAGCG AAGAGCCTGG GGGAGGGGGC ACATTGGATC
  ACCCCAGGCG ATGTGACAAA ATCAACCCAG ATCAAACAGA GAGAAAACAC TAGAAGCCAA
  AAGGCCTGTA AAGACCCAAG TGAATATTTA GGACAAATAT ATATTGAGAA ACATGGGAAA
  GTATGAAAAA GCAAGAATAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148344100	ENSMUSSNP5272480	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48589910					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333572 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	1177 bp proximal
Rr572142	regulatory region 572142	1280 bp proximal