rs48589710 SNP Detail

Summary

• ID
  rs48589710
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60703986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCCTGA TAGCCATATG
  ACCGTATTGC TGGTTGTGCT GGCAAACACC AGCAGGATAC ACTCCAATGC TGAAGACTGG
  AGGGTCATAG GAAATACAAC CTTATCTCTC TTAAACAGCA ACCAACACAC AAAAGTTAGT
  GTTTTCTTCT ATGAATAAAC CAAAAGTACA CTTTATTTCC TAACAAAAAG CTATATAAAA
  M
  CATTTAAAAC TGTTTATAAT TTATGCTTAC CCTTACATGA AAATAAATAC AAAAATCATT
  AATATTTTTT TCAGTTACAT TTATTGAGAC TTTCTGCTCC AGTTACTCAA AGAAATTGTG
  TTTAACTAGT CCCTCATAGA GTTTACAGTG TATTGGCAGA AAAAAATATA AAAAGCTGTT
  AGAATAAAAT ACAACGATTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135220967	ENSMUSSNP618744	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48589710					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60703986 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Gm38326	predicted gene, 38326	1837 bp downstream
Rr577459	regulatory region 577459	1261 bp proximal