rs48586493 SNP Detail

Summary

• ID
  rs48586493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130909041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACAGTG TACCTACATA
  CATGAAATAA ATAAATAAAT ATCTGAGAGA GACAGACAGA CAGACACTGG CTAGTCATCT
  CACAATGTTC TCATGTTTAA AATATGATAC CATTTGTATA AAGCAGAAAC ACAGGAAAAA
  TAAAATCTGT GGTATTATAT TTGATTTTTA AATTAACTTG ATTAGTGAAG TTAGCAGCTA
  Y
  ACTGGGCAGG GGTTGGGAGT GGGGTACTCT GAAGTGCTGG TATTTCTGGT TTTGTTTTTT
  GTTTGTTTGT TTTTTTATCT TATTTATATT ACATAGAAAG CCATTTTGCT AATACACTTA
  CCATGTGTAT ATATTGTGCT TGAATTACAG CTAAGTAATT ATTTCTGAGG GGCTTTAGAC
  TACTGAAGAT TGGGCCCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598341	ENSMUSSNP1452676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48586493					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130909041 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	499 bp proximal
Tssr20240	transcription start site region 20240	1591 bp upstream
Tssr26336	transcription start site region 26336	165 bp downstream
Tssr26337	transcription start site region 26337	1004 bp downstream
Tssr26338	transcription start site region 26338	1334 bp downstream
Tssr26339	transcription start site region 26339	1408 bp downstream
Tssr26340	transcription start site region 26340	1490 bp downstream
Tssr26341	transcription start site region 26341	1755 bp downstream
Tssr26342	transcription start site region 26342	1776 bp downstream
Tssr26343	transcription start site region 26343	1830 bp downstream
Tssr26344	transcription start site region 26344	1885 bp downstream