rs48584477 SNP Detail

Summary

• ID
  rs48584477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTACAA GCCTCTGGGC
  AATGCTGGAA GGGAGGAAAC TGCCAGGGGA GCCACGTCTA GAAGTCAGCG CTTCCCTCCT
  CCTGCCAACT CCACGTTTCC GCCAGCAGGA GGCACCAGCG AAGCGCCAGC GCGGGGTTCG
  CACGGGAACC TCTACAAGGA CTTGTTCGTT TGCTGCAGCA AGGAAGTCAG AGAGCCCAAG
  Y
  TCTGGAGCGA CAGCCCTGGA CTGCACCTCA TTCTCCGCCT CTGTCCTTTA ATGCTCGTGA
  GACTGGGTAG TCTGCTTGAC CCCTCTGAGT CTCACATTCC CCGTGTGGGA AGTGAGGCTG
  GCCCTGAGAG GGATATTTGC TCCAAATTTA GAGGTTGAGG CAGACAGTCT TCTGGCACAA
  GAGTCTGCTC AGTTCAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557372	ENSMUSSNP4350841	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48584477					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	within coordinates
Cpgi15094	CpG island 15094	1052 bp proximal
Rr367750	regulatory region 367750	1270 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	82 bp distal
Rr602259	regulatory region 602259	538 bp proximal
Rr602260	regulatory region 602260	1472 bp proximal