rs48582563 SNP Detail

Summary

• ID
  rs48582563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152660267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGTAGTA ACAACCCTCC
  TGTTCACTGT ACAGACCCTA GCCAATCCCC TGCTGAAGCC TGGGCTCTGT GCCAGGCCTT
  GGGATAAAAT AAGCCAGTCC AGGTCTGCAG GAAAAGCGAC AACATAGTGG CATAAGGATA
  GATTTTGGCA CATGGCATAT CGTCAGACTG TGCTCTGCCT CTTAGAAGAT GTATTACTAC
  R
  GAGGTCTCTG AGTCCTGGAT GTGCCCTCTT CACACTAGAG CAGTTGTGGA GACCAAATAA
  GATAATTATG TCAAGGGCAT AAACATAGCA CCTGGCACAG AGCAAGCAAG CACTCCACAC
  ACAACACCTG CTATTATTCT AACAACACTC AGGCTTTCTC TAACTTATGC CTTGCTTACT
  CCAGTAAGGT TAGCATTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147974920	ENSMUSSNP2235107	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48582563					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152660267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			150 bp distal
Rr367334	regulatory region 367334			1880 bp downstream
Rr367335	regulatory region 367335			1671 bp downstream
Rr374094	regulatory region 374094			1343 bp upstream
Rr567481	regulatory region 567481			366 bp proximal
Rr567482	regulatory region 567482			1390 bp proximal