rs48582136 SNP Detail

Summary

• ID
  rs48582136
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTAATAC AGATGGATTC
  TCAGGGATTG ACGAGTCTCA TATGCACTCC AAAAGGTAAC ACATTTCAAA ATGACTGTGG
  AGTGTAATAG CCAGTTATGA TATCATTAGC AGCAATGTAC TACGGAGGCT TGGTGATGGG
  AGTTCACAGG TTCTTCTAAC AGAAATGCCA CGTTATAGCA ATATTTAAAG AGACTGGTAA
  A
  TATAAGCTAT GTGCTGTGTA GTTTCATGTC AACTTGATGT AAGGTAAAAT CATATGTGAG
  GAGAGACCCT TGGTTTTAAA ATGCTTCCAT AAGATAAGAA TGGAAACAAG CCTATAGGGC
  ATTTTCTCTA CTACTGTTCA ATGTGGAGGG CCCAGCCCCT TATGGTGGTC CTTTTCTATA
  AGACAGCAGG CTAAGCAAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146959927	ENSMUSSNP6355776	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48582136					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1655 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1865 bp upstream
Raet1e	retinoic acid early transcript 1E	1798 bp upstream
Rr428833	regulatory region 428833	1335 bp proximal
Rr428834	regulatory region 428834	1853 bp proximal
Tssr92677	transcription start site region 92677	1651 bp upstream
Tssr92678	transcription start site region 92678	1725 bp upstream
Tssr92679	transcription start site region 92679	1777 bp upstream
Tssr92680	transcription start site region 92680	1822 bp upstream