rs48580237 SNP Detail

Summary

• ID
  rs48580237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137766553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TTCCCCTTCA CAGGGATAGC
  Y
  GGCTCCTAAT CCTGCTTCTC CATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135947704	ENSMUSSNP4298472	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320978092	CHEV_3_137723756	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48580237					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137766553 () rs orientation: forward

Symbol	Name	Function Class
Gm5105	predicted gene 5105	within coordinates
Rr586067	regulatory region 586067	within coordinates
Tssr31936	transcription start site region 31936	1123 bp upstream