rs48580211 SNP Detail

Summary

• ID
  rs48580211
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6789246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGCAAC CTTACTATCC
  TATTTTAGTT AAGCTAAGAA TAGCTAACAC CCTTCACCAA GCAAAGCCAG GAAGCTGTAT
  GAGGAACATC TCTGCTCTGT CTCAGTAACA ATGTTACTGC CTGAAATCAC AAACTAGTTT
  ATCTACCTGG ATGTTTCAAA GAATGTGGTT CAAAACCCAG TTGGATTCGA AAGTTGACTC
  M
  AAGCTGGCAT TTCAGAAGAT GGTCCTTTCA TTATTATTCT ATATGAGGAA TTACTCTATA
  TAAATTCGTT CCATTTACAA TGATCAATAA TATCCCCATT TGCCCCTTTC TCTTGGAATT
  CACTTGCACG AGACCTAGTT TGAATAATCC ATTTCCTTAT GGACAAAGAA GCATCAGCGG
  CATAAAGACA AGAATAACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145964715	ENSMUSSNP2924328	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48580211					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6789246 () rs orientation: forward

Symbol	Name	Function Class
Rr588421	regulatory region 588421	1937 bp distal
Rr588422	regulatory region 588422	1274 bp proximal
Tox	thymocyte selection-associated high mobility group box	Intron