rs48579816 SNP Detail

Summary

• ID
  rs48579816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127152514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCAAAGT TGCTTCTAAT CCTATCAGAG TTTACTCCCT
  GGTAACTAAG CATTCACGTA TGAGCCTATG GGGACCATTT CTATCACACC ACCACACTAT
  R
  GATAGTCAGG GTTTCATGAA TTTTAAGTCC CATCTTCTCT TTCTTGGTAT ATCCCTCAGT
  AGTTGCCAAG GGAGACAAGA CAGAAGATAT ATAGTATTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147525547	ENSMUSSNP6666024	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48579816					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127152514 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	1502 bp downstream
Rr397284	regulatory region 397284	140 bp upstream
Rr564490	regulatory region 564490	1514 bp distal
Rr564491	regulatory region 564491	1726 bp distal
Rr564492	regulatory region 564492	within coordinates
Rr564493	regulatory region 564493	782 bp proximal