rs48579531 SNP Detail

Summary

• ID
  rs48579531
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70350301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAGTGC CAAGACATGC
  CCCTCCCTGC CTGCCAGCAC ACATGGGCGC ACACACCCTG CTCCATCCAC CAGCTTCCCA
  GAATGCTGAG CAGGGTCGCC TTTATTCCCA GTGAGGAGAC GTGTGGGCTC TTCCCTTCCC
  AGGAGAAAAA AACCTACATA TCAAGAAGAT CCCCACAAAA ATGTTAGTCA GATGGCTCTT
  M
  ATGTTTAACC AACATGCTAT GCACTTCAGA ATTCTCTTTT GTCCCCAAGT CACACATGTG
  AGGCTTCCGA GGAAGACGCG TCAGACCAAT CATAAAGACT AGAAAGAAAG AGACTGGAAA
  GGGAGAAGAA ACTTTAAGCT GCTACAGTCC ACAGAGAGAT GAGCCAACTG GAAAAATCAA
  AACAACACCA CAAAAGACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62449836	NES17257067	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48579531					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62449836	NES17257067	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70350301 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494844	regulatory region 494844			1748 bp distal
Rr494845	regulatory region 494845			1766 bp distal