rs48578395 SNP Detail

Summary

• ID
  rs48578395
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112186017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAAAGACA AGCAGGTGAC ACACAAAATA AAACTGAATG
  TGGTTTAAAA TAAAGGCAAC TCATCAAACT CAGGACTTGG GAAATTCGGA AAATTCTGAG
  G
  TTTACAAGAC TGCCCCCACT TCCCAAGAAT ATACAGGCTG TAAATGATTA CTGGGGCAGA
  GGAGACTCTC CTATCTTCCA TGGAGCTGCC TCCAAGTTG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133558889	ENSMUSSNP6709878	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321908054	CHEV_6_112159050	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48578395					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112186017 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	1652 bp upstream
Rr636305	regulatory region 636305	1459 bp distal
Rr636306	regulatory region 636306	1607 bp distal
Rr636307	regulatory region 636307	114 bp distal
Rr636308	regulatory region 636308	75 bp distal
Rr636309	regulatory region 636309	1137 bp proximal
Rr636310	regulatory region 636310	1638 bp proximal