rs48576553 SNP Detail

Summary

• ID
  rs48576553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40497113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTTAAG AATTTGTGTT
  GAAGGCCTCA ATCTATGAGA GATAACTCAT GTGGTCTGCT CAGCCTGCCC TGTGCGTTGG
  CAGTCCAGTG GTCAACCGTG TTAGCTGCAA TTGCTGTGCC ATGAAGAGGA GTCCATCTTA
  GCCGAACAGA GCGTCAGAAG AGCGGAGCTG ACACTTAGGT GACCACCATG TTCATATCCA
  R
  TCGTTTAAGG TGCTGACTCC CATGACCACC AACAGAAAGA GTGCTGCCAA ATCCCTGCCA
  TCTTCGATCC CGCTTTCCAC AAAGTACACT GTCATCCTGA TACCAAGGAA AGACTTGCAA
  GCTCTGCCTT ACCAGGAGAG GAATGAAGGA ACCAGACACA GAAGGACTCT GAACCTATAG
  TATATACACT GTAGACATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss60393562	NES15898240	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs48576553					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393562	NES15898240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40497113 () rs orientation: forward

Symbol	Name	Function Class
Gm30184	predicted gene, 30184	within coordinates
Rr374853	regulatory region 374853	1001 bp downstream
Rr575816	regulatory region 575816	977 bp proximal
Rr575817	regulatory region 575817	1470 bp proximal