rs48575520 SNP Detail

Summary

• ID
  rs48575520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63777069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGAGTCTG AGCTCTTTGG ATCTTTTCAT TGGGTTCTTT
  GACAGATTCC TACTGAGTCT CTCCAGTTGC TAAGTTCACC TGTTTGTAAC AGTCCCCATC
  Y
  GCCTTCCTAT GGGATGTACT CTTAATAACC CAGGCCCAGG GGACTCATTT TTCCCCAGTT
  CTTGCCACAG TTAATGCCTG ATAATGTACT AGAAACGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146447369	ENSMUSSNP864947	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48575520					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63777069 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	884 bp proximal
Rr593619	regulatory region 593619	1468 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron