rs48573106 SNP Detail

Summary

• ID
  rs48573106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78872583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATCATGC TTTGCTGGGT TTGCCCCGCA CCGCACCGCA
  CCGCACCGCA CTGCATCACC CTGCCTTGCT TCTGATTCAA GATTTCACCA TGTAGCCTAG
  W
  CTGACCTGGA ACTCCTACTC TCTTGCCTCA GTCTCCCACG TGCCAGGCCT ACTCGCATGT
  GTCACCATGC TCAACAGCTC TCAGCACCGC GCAGTTCCCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60421438	NES15923013	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48573106					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421438	NES15923013	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78872583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	1524 bp proximal
Gm9762	predicted pseudogene 9762	1080 bp downstream
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	178 bp downstream
Rr578452	regulatory region 578452	454 bp distal
Rr578453	regulatory region 578453	1367 bp proximal
Rr578454	regulatory region 578454	1542 bp proximal