rs48572843 SNP Detail

Summary

• ID
  rs48572843
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22033977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA TCCTGTCAAC TGTCTTCCCC
  C
  GCACCCCACT CCTCAATAAG GTCCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146960080	ENSMUSSNP5458606	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48572843					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22033977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	321 bp proximal
Cpgi1374	CpG island 1374	1109 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	531 bp upstream
Raet1e	retinoic acid early transcript 1E	464 bp upstream
Rr384270	regulatory region 384270	1255 bp upstream
Rr428833	regulatory region 428833	1 bp proximal
Rr428834	regulatory region 428834	519 bp proximal
Tssr92677	transcription start site region 92677	317 bp upstream
Tssr92678	transcription start site region 92678	391 bp upstream
Tssr92679	transcription start site region 92679	443 bp upstream
Tssr92680	transcription start site region 92680	488 bp upstream