rs48569980 SNP Detail

Summary

• ID
  rs48569980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22535677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTGGGA GTCCTGCCAT
  TAATAGTCAC CTACTGCAAA CAGCTCTCTA ACCAAGGGCA AGAGCAGCAT TGCTCTACTG
  GCATAAACAC ACATTTAGAA ATCAGATCCA TATCCCATTC ATAAAGAAAA GGGAGCATAT
  TTCCCCTACA CAGTCACTTC CTTTTTCCCC TCTACAGTAA ACCATACTAA TTTGCATTTA
  Y
  TAACTATACA AATCAATGAG TTGGTTGTGG CACTCCAGGC ATGGACCAAT ATACTTTGAT
  CATCGTCATC CTCTATGTTC CCCTTTCTCT AACTCCAAGT CTTCTACTTT CACATGTTTC
  CCCCAGTGGC ACTGGCATGT TAACTGCTGG TATCAGTTCT TATTTAGGCT TCCACATTGT
  TGGGATTGCA TGGATGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60870863	NES15982548	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48569980					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60870863	NES15982548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22535677 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	1731 bp proximal
Rr627120	regulatory region 627120	1787 bp proximal