rs48566763 SNP Detail

Summary

• ID
  rs48566763
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATAAGAG TTGGGATTTT
  TATGTTTTAT CTGGAAGTTG TGGACCTGGG TGAGCCTCTG CAGTCCTACC AGGTGAATTT
  AACCTGTAAA GGGTCCTCTG AAGGGGAGAT GGTCAGGAAT GTCTGTTACC CGCTTGAGCT
  GGGTGTGATG AATCCAGGGG GTGATCCCAG CAACCTTGAT AGCAATGGGT GTGGTAAGAA
  S
  GATAGGATTC GGTCCATGAT TCCTATTGAG GAACAATAGG AAGGTTCCAC GATTCAGGGA
  CAATCAAGAA CACTTTTCTC GCCTGTATTC ACCTTGAGCC TACTTCCTTG TCCTAGCCCA
  ATGTCAAAAT CTTGCCTGAG CCTACTCCCT CGTCCTAGCC CAGTGTAAAT ATTGTCAATA
  TCCCTGAAGC AGCACCAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030192	ENSMUSSNP2107367	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48566763					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622503 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1191 bp upstream
Rr480227	regulatory region 480227	880 bp proximal
Rr480228	regulatory region 480228	978 bp proximal
Rr480229	regulatory region 480229	1598 bp proximal