rs48566485 SNP Detail

Summary

• ID
  rs48566485
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATACAAAT GTCTCCTGGT
  TGGAGAAGTT GACAATGAGG GAGAAAGCTC ATACTGAGTT TTCTAAAGGT CAGTCTCAGG
  ACAGACAATG ATGATGCCTA ATATTTATTT ACAGCAGCCG TGTGTGCTAG GCGTGCGGTA
  TCTTTGCATG AATAATCTCA TTCCATCTTT CCAAGAGTTT CTAAAACAGG TTTGATCATT
  W
  TGCCTACTGT ATACTGAAGA CAAGCTGAAA GAATTGAGTA ACTCACTCAA TGTCATGTAG
  CTAGAAAGTG AAGCAAGGAC TTGAACACAG GTCATTGAAT GCTGAGTTCT CCCAGTCTCT
  TCAACTGCTC TTACCCATTC CCCTCCATGG ATGGAGGGTC TGCCATTCTT ACTAGCCCTG
  GCCTCCAGTG AAAAACCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115152	ENSMUSSNP5705445	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320438712	CHEV_2_102388068	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48566485					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	1855 bp proximal
Rr561703	regulatory region 561703	1720 bp proximal