rs48566307 SNP Detail

Summary

• ID
  rs48566307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153431294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC CACAATCTTC ACACAATGTG
  R
  CATTGTGCAC AGCATGTGTA GCATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136111707	ENSMUSSNP2556140	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321031067	CHEV_3_153388621	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48566307					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153431294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13961	CpG island 13961	159 bp distal
Rr587739	regulatory region 587739	1745 bp distal
Rr587740	regulatory region 587740	494 bp distal
Rr587741	regulatory region 587741	within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	490 bp upstream
Tssr32435	transcription start site region 32435	1744 bp downstream
Tssr36240	transcription start site region 36240	478 bp upstream