rs48564118 SNP Detail

Summary

• ID
  rs48564118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121221273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT CTTTCAGACT TTTGGCCTGG
  R
  AAAGAGATGA GAGGCGCCCC CCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135720559	ENSMUSSNP6076143	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320903405	CHEV_3_121130542	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48564118					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121221273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnn3	calponin 3, acidic			Intron
				Noncoding-Transcript-Variant
Cpgi13758	CpG island 13758			within coordinates
Gm42928	predicted gene 42928			50 bp upstream
Gm42929	predicted gene 42929			422 bp upstream
Rr397975	regulatory region 397975			1006 bp downstream
Rr584073	regulatory region 584073			844 bp distal
Rr584074	regulatory region 584074			within coordinates
Rr584075	regulatory region 584075			1312 bp proximal
Tssr31441	transcription start site region 31441			1083 bp downstream
Tssr31442	transcription start site region 31442			1049 bp downstream
Tssr35415	transcription start site region 35415			134 bp upstream