rs48561843 SNP Detail

Summary

• ID
  rs48561843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52030472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAAGAG CCTAGCATAA
  TTGTCCTATG AGAGGACTGA AAAGACACAG ATATGCACAG CCAAACACTA AATGGATCAG
  AGAGTCTTAT GGAAGAGCTG GGGGCAAGAT TGAGGAACCC GAAGAGGATA GGAAATCCAC
  AGAAAGACCA AGAGAGTTAG CTAACCTGAA CCCTTGGGAA CTCTCAGAGA CTGAACGATC
  W
  ACCAAAGAGC ATACATGGGC TAGACTTGGG CCTCCCTGCA CATATGTAGC AGATATGCAA
  CTCTGTCTTC ATGTGGGTCC CCCAACAACT GGATCACAGG CTGTCCCTAA AGCTGTTGCC
  TGCCTGTGGA TCCCATTTCC CTAACTGGGC TGTCTTGTCT AGCCTCAGTA GGAGGGGATG
  TGCCTAGCCC CACAGAGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137728964	ENSMUSSNP28932	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48561843					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52030472 () rs orientation: forward

Symbol	Name	Function Class
Rr387211	regulatory region 387211	within coordinates