rs48561520 SNP Detail

Summary

• ID
  rs48561520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76870370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCAAC AAGGCACTGG
  GGCTGAGGAA AGAGATTGAT TCTGGGCATT TGAGCCAGTG GCAAAGATAC AGTCAACACT
  CAGCCACCAC AATGGGAGAA GGGCATTGGC GTTTGTTTTC CCCCCTTCCT TAATTAAAAG
  GAACCTTCCT GTTTCAAGAT AAAAAGAAAG TGGGCCTTGG AAAGAAGTTT GTGAACAGTT
  R
  TATTCCACAC TTCTTACCCA CCTCCACCCC TACCCCCATC TCTCACACGG GTGCTAGGCT
  GGTCAGAAAG GACTGTGTAG TGCCCCTCCC CGACACTACA ACCCACCCGG GCTGCCAAGA
  ATTTCTTTCA GTTGCCTGGA AGAGGTTGCA AGTTAAGAAG CCACAGGATG CTCAGGGCAT
  ATGGAGTCCT GGTCCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52375943	NES15271690	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48561520					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52375943	NES15271690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76870370 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			710 bp distal
Rr434376	regulatory region 434376			1842 bp distal
Rr434377	regulatory region 434377			1862 bp distal
Rr434378	regulatory region 434378			1258 bp distal
Rr434379	regulatory region 434379			1519 bp distal
Rr434380	regulatory region 434380			1372 bp distal
Rr434381	regulatory region 434381			141 bp distal
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				Noncoding-Transcript-Variant
Tssr94205	transcription start site region 94205			1789 bp downstream
Tssr94206	transcription start site region 94206			1278 bp downstream
Tssr94207	transcription start site region 94207			1252 bp downstream
Tssr94208	transcription start site region 94208			1235 bp downstream
Tssr94209	transcription start site region 94209			1221 bp downstream
Tssr94210	transcription start site region 94210			1293 bp upstream