rs48559116 SNP Detail

Summary

• ID
  rs48559116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTTCCT TTGTTGTTTT
  ACTTCAGACT CCTCGCTCCA GAAAGCCTAT GTTCTAACCT CAACTCTTCC CTAACTCTTC
  GCTAAGTAAA AGGGAACTGT CTGAGGCAGG GGGATGGATG TCGGACTGGG AACATGGGTC
  ATAGCTCAAG ACTGGTTCTC CTGAGATAGA ATTTTCCTTG CCTTTCTTCA CAGTAATAAA
  M
  CCCCAAAACT TAGGTGGCCT TTTTGGGGGA GTCTATTTCT ATTTACCCCT GAAACAGATA
  GCCACTCTAG GCCAAAGAAA ATTTGCTTCC AGTCCAGCTT AGTGAATGGG ACAAACTTAT
  TGGTGTTGTC TGTAGGGACA TGGGTGGCTT GGGCAATTGT ATCATCAAAA AGCCTACCCC
  AGCATGGTGA CAAGTGCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147553197	ENSMUSSNP735074	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss321353452	CHEV_4_135451741	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48559116					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623137 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	422 bp distal
Rr602184	regulatory region 602184	128 bp distal
Rr602185	regulatory region 602185	145 bp proximal
Rr602186	regulatory region 602186	1046 bp proximal
Rr602187	regulatory region 602187	1169 bp proximal
Rr602188	regulatory region 602188	1197 bp proximal
Tssr39650	transcription start site region 39650	631 bp downstream
Tssr39651	transcription start site region 39651	430 bp downstream
Tssr39652	transcription start site region 39652	350 bp downstream