rs48555845 SNP Detail

Summary

• ID
  rs48555845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55678873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCCTGA GTGACTACCT
  ATGCAAAAAT TGTAGGATGA AAAAGAGGTT TATTACATGG CATTTTCTCT AAATACCTTT
  TAGAAAAAAA TGGAGACTAT ATAGTATCTA CAGCAGCTAC TGATGTTGGC TGTAATTATG
  GTTCTAGGTA GCCTTATCCA ACAAGGGCTC ACTCTGACCA AGTGCCACCT GTAATACAGG
  R
  ATGGCTAGTG TCAGTCTTCA TCGCAGAAGA ATATTTGGTC TATGGGGGAG TTGTAAGAAA
  CATGTAAACA ACAACAACAA CAAAGACCCT ACTATTTAAT GCTCAATCAA GAGATACAGA
  TATTTCCTCT GAGGGGCTTC AAAGGCAGTG CTAAACTTTT ATGCTTGTCC CTATGTGTTT
  CCAGTCTTCA CAGTTGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133214582	ENSMUSSNP5230225	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48555845					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55678873 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1811 bp proximal
Rr631015	regulatory region 631015	584 bp distal
Rr631016	regulatory region 631016	1953 bp proximal