rs48550047 SNP Detail

Summary

• ID
  rs48550047
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87655307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG TCTAAATGAA TATCCATAGA
  A
  CTGTGTTCCT AAACCTTCCC ACAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135467951	ENSMUSSNP5385289	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320835319	CHEV_3_87551922	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48550047					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87655307 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	613 bp proximal
Rr579536	regulatory region 579536	994 bp proximal
Rr579537	regulatory region 579537	1202 bp proximal
Tssr33946	transcription start site region 33946	533 bp downstream
Tssr33947	transcription start site region 33947	556 bp downstream
Tssr33948	transcription start site region 33948	577 bp downstream
Tssr33949	transcription start site region 33949	599 bp downstream
Tssr33950	transcription start site region 33950	619 bp downstream