rs48548985 SNP Detail

Summary

• ID
  rs48548985
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27246988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGTGCT GACAACCCCT
  GGCTTCCACC ATGCTAAGGC AAGCACTTCC CAAGGAAGTC TACTACTAGC ACTCAGGAGT
  GTTATGGTTT GTTTTCTGGT TCTGATGCTA GGGCCTCGTG CATACTAGGT GTGGTGGTTT
  GTATATGCTT GGCCCAGGCA GTGGCACTAT TTGGAGGTAA GGCCCTGTTG GAGTAGGTAG
  G
  TGTAGCCTTG TTGGAGTAGG CATGGCACTG TGTGGGTGTA GACTTTAAGA CCCTCGTCCT
  AGCTGCCTGG AAGCCAGTAT TTTCCTAGCA GCCTCCAGTT GGAGATGTAG AACTCTTGGC
  TCCTCCTACA CCATGTCTGC CTGGATGTGC TTGCCATGCA CCCACTTTGA TGATAATGGA
  CTGAACCTCT GAACCTAGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134702647	ENSMUSSNP677688	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48548985					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27246988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			1633 bp downstream
Rr574361	regulatory region 574361			1607 bp distal
Rr574362	regulatory region 574362			646 bp distal
Rr574363	regulatory region 574363			948 bp proximal
Tssr28610	transcription start site region 28610			693 bp downstream
Tssr28611	transcription start site region 28611			1421 bp upstream
Tssr28612	transcription start site region 28612			1526 bp upstream
Tssr28613	transcription start site region 28613			1855 bp upstream
Tssr32839	transcription start site region 32839			895 bp upstream
Tssr32840	transcription start site region 32840			853 bp upstream
Tssr32841	transcription start site region 32841			1230 bp downstream
Tssr32842	transcription start site region 32842			1285 bp downstream
Tssr32843	transcription start site region 32843			1356 bp downstream