rs48548542 SNP Detail

Summary

• ID
  rs48548542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:129646165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCTGGAA CCATCAGTAT GACTTGTTTA GTCATGGGCT
  ACTTAAAGGC ATTCTGTGGC TAAGGATGCA CCTCAGTGGC ACACAGCACT TGCCTAGCAA
  R
  TGGGAGCATT TCCAGCAACA CAAACAAACT AATGCGATGA AAATATTCTG GTCAACAATG
  AATCGTGTGT AACAGTGGTC CCACAATATT ACGTAGCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss60946592	NES16174351	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	A	A		G	A	G
ss133659399	ENSMUSSNP7179664	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G
ss321950406	CHEV_6_129619220	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs48548542					SNP	G	G	G	A	G	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60946592	NES16174351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129646165 () rs orientation: forward

Symbol	Name	Function Class
Klrc1	killer cell lectin-like receptor subfamily C, member 1	Intron