rs48547539 SNP Detail

Summary

• ID
  rs48547539
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153417753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCCTTCC CCCTCTACTG CTCAATAGGC AGAGGTCCAG
  CCTCCCTGGC ACTCAGGGAG CTGCCCTGGG CGTGGGGAGG AGCGTGTGGG GTTGGGTGGC
  T
  GGTTGCCTTT ATTGGGCTAC TCCTCCTTGG CTCCCTGCAT GCGTGAACCT GAGGCTCACA
  GTCCTGTCGC TCACAAGGAC AATTGTTTCC AAATCAGGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147997065	ENSMUSSNP1766611	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48547539					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153417753 () rs orientation: forward

Symbol	Name	Function Class
Rr567686	regulatory region 567686	within coordinates
Rr567687	regulatory region 567687	1227 bp proximal
Rr567688	regulatory region 567688	1872 bp proximal