rs48546345 SNP Detail

Summary

• ID
  rs48546345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89257720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCCTAA ATAGCATCCT
  GCAGATAGCA CCTTGACACA ACACCCTGGG AACACAATCC TGGAAATAAC TCCTTAGCAC
  CCTCATAAGT ACCTTGACAT AGTACCCTGG AACAGCACCC TGACACAGTA CTGGAAACAG
  ACTTCTGGGG GGAAGTCCTG CTTCTGCTTT CACTTCCCTT GGTGTTAAAG ACCTCTCCCA
  R
  TCCTGTCCTC AGTTCCCTCT GCTAGGACTG GCCTGAGCAT CTGAGTCATG CGCCTGCAGC
  GGTGCTGGGT GAGGTCCAGC CTAACCCTTG GAGTCAGCTG GGGTACTGTG GGCCTGCCTT
  CCCTGGGCCG GAGTGGCTTG CTGCCTGTGG ACACCAAGGA AGGGTGGCCT GCCAGAGGAC
  GAAGGCAGTA ACAGGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133371290	ENSMUSSNP2752455	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48546345					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89257720 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr634089	regulatory region 634089	within coordinates
Rr634090	regulatory region 634090	778 bp proximal