rs48545693 SNP Detail

Summary

• ID
  rs48545693
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149131656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG AGCCTGCAAA AGAAAGGGAA
  A
  GTGGGAACAG ACAGCAGGTG CACCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148026183	ENSMUSSNP839965	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321424463	CHEV_4_148421308	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48545693					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149131656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604817	regulatory region 604817			902 bp distal
Rr604818	regulatory region 604818			132 bp proximal
Rr604819	regulatory region 604819			399 bp proximal
Rr604820	regulatory region 604820			1596 bp proximal