rs48542912 SNP Detail

Summary

• ID
  rs48542912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18391837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGAATA TATTAAAAGG
  GAATAATGTT AACACTAAAA ACTCATGGAG CTTCTGAACA TAATTCACTG TTGATGTATT
  TTTTTTTCCA AAAAAAAAAA AAGAAGAAAA GAAAAGAAAG AAAAGAAAAA AGAAAAAGCT
  GTAGAGGAAA GAGGAAAAGC CTCTAATTCT GTCAAAAGCC TCCCAAGAGT GTTTTAAAAC
  R
  TTTTCTGCTT TATAATAAGA AAGAGATGCA TTAAAATGTT TTGAAGATAG GATAACATGA
  TAGTAAATGT GGAGATGGCT CAACAATTAG GAGAACATTT TTATAATCTC CTGTAACTAT
  GGTTCCAGGA ATTCAACATT CTCTTCTGGC CACCACAGAA ACCTACACCC TTGTGCATAT
  TTCTGCACAC ACACACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376132	NES15871349	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48542912					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376132	NES15871349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18391837 () rs orientation: forward

Symbol	Name	Function Class
Gm65503	predicted gene, 65503	within coordinates
Rr374602	regulatory region 374602	1056 bp upstream
Rr573896	regulatory region 573896	1441 bp proximal