rs48541751 SNP Detail

Summary

• ID
  rs48541751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142845362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAATGA AGTGGAATGC
  ACCATGAAAT GAGTACATCT ACACAAACAC ACACACAAAT TTTTCAAAAA AAAAAGCAGA
  AAGAAAAAAT TCTTGGGCCT GGATGGTTCT GAGTCTTATG ATACTGGGGC AAGCTGCAGT
  TGACATGGGC AGTCGGCAAG CACAGCCTAG GCGCCTGCTT TTGGGGTCTC TTTTAGTTTC
  R
  TCTCCTCTTT AACACTGTAA GACGCCCGTA CCCTTTTGAT GGAGGAGGGT TTCTGTTCCT
  TTCCAACAGG CCCACAAGGA CCTGGCCTCT TTCTCACCTA AAAGGTCTTA TCTATTGGGC
  TCTGTCCTGT TGGGGCTTCT AGGTCAAACC TGTTTGGTCT GAGCACCACT ACTGGCGTTT
  TAATGTCTAG TGTGTAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147773299	ENSMUSSNP6876216	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48541751					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142845362 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	within coordinates
Rr604159	regulatory region 604159	1241 bp proximal