rs48541608 SNP Detail

Summary

• ID
  rs48541608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127151570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTATTGCT TACTTCACAT CTAATTTTGC TACTGTTATG
  AGTTGTAAAT GTCTTTTGTT TTCCAAAAGT CTTTGACAAC CCCAAAAGGG GTCAAGATCC
  R
  CAGTTGAGAA TCACTACTCT AAATTCTGAG CATTCATCAA CCCATTCTGA TGCCTCCTAC
  GAGGGCAGCA GGAAGAGCAG AAGTGGGAGG CAACCAGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147525493	ENSMUSSNP5365977	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48541608					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127151570 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	558 bp downstream
Rr397284	regulatory region 397284	1084 bp upstream
Rr564490	regulatory region 564490	570 bp distal
Rr564491	regulatory region 564491	782 bp distal
Rr564492	regulatory region 564492	685 bp proximal
Rr564493	regulatory region 564493	1726 bp proximal