rs48541338 SNP Detail

Summary

• ID
  rs48541338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102632575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGATGTAC ACCACAGGCA TCCGGACACT GCATTACTAT
  TCAGATCCCT GAAACAATTT GAAGGAGCCA GGGAGCTAGG TTTCTCTTCT CCTTCTATCT
  M
  ATGTTTCTTG TTATTGATCA TTTGTGCATA AATGGACATA AAAAATTTTC CAGAAGGTAG
  ATATTAGTTA TTTATCTTAC TCTGTAAATA AAGTCAACC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147124398	ENSMUSSNP6928426	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48541338					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102632575 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	1725 bp proximal
Rr561740	regulatory region 561740	1818 bp proximal
Rr561741	regulatory region 561741	1911 bp proximal