rs48538494 SNP Detail

Summary

• ID
  rs48538494
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA GGAAGACATA TATCGACTTT
  K
  GATACATTTA ATGTTTCTAA ACACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134617896	ENSMUSSNP2975921	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320667824	CHEV_3_14873128	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48538494					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938188 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	747 bp downstream
Rr397608	regulatory region 397608	1274 bp upstream
Rr573713	regulatory region 573713	1359 bp distal
Rr573714	regulatory region 573714	1341 bp proximal
Rr573715	regulatory region 573715	1437 bp proximal
Rr573716	regulatory region 573716	1980 bp proximal
Tssr28448	transcription start site region 28448	1582 bp downstream
Tssr28449	transcription start site region 28449	1518 bp downstream
Tssr28450	transcription start site region 28450	1475 bp downstream
Tssr28451	transcription start site region 28451	1458 bp downstream
Tssr28452	transcription start site region 28452	1436 bp downstream
Tssr28453	transcription start site region 28453	1423 bp downstream
Tssr28454	transcription start site region 28454	1411 bp downstream
Tssr28455	transcription start site region 28455	1393 bp downstream
Tssr28456	transcription start site region 28456	1356 bp downstream
Tssr28457	transcription start site region 28457	1294 bp downstream
Tssr28458	transcription start site region 28458	1097 bp downstream
Tssr28459	transcription start site region 28459	1060 bp downstream
Tssr28460	transcription start site region 28460	974 bp downstream
Tssr28461	transcription start site region 28461	918 bp downstream
Tssr28462	transcription start site region 28462	881 bp downstream
Tssr28463	transcription start site region 28463	830 bp downstream
Tssr28464	transcription start site region 28464	789 bp downstream
Tssr28465	transcription start site region 28465	650 bp downstream
Tssr32653	transcription start site region 32653	1324 bp upstream
Tssr32654	transcription start site region 32654	591 bp upstream