rs48537491 SNP Detail

Summary

• ID
  rs48537491
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136038919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCCCGGT CCGGGCGAAG
  GGTTTCAGGC GTTTCCCCCT GACCCCGGTG CTTGCCCCCG AGGCCTGCGG TCAGGCCTGG
  CCCGCCTCTC GCCCGGCGGC CTGTGGGATG TGTTGATAAC CGGGTCGCGC CCGAGGGGGT
  GGGGTGAGCC GAGGGCGGGG TGCAAGTCCC AGGGTTACCT GAGCCGGGAG CAAACTTTTA
  M
  GGGAGTCGGA GCCGAGGGGC CGAGGTATGG GGGGTGCCTC CCGCCCGATC CCCAACCTGC
  ATGCTTCGAG CCGGGATTTG AAGGAAAAAA TGACTACTAA GAGGCCGTGA CACTTGGTTT
  CGAGCGGCGC CTGAGCTAGG TAATTCTGAG AATGTCATAG GCGCTCCAGT TTGGAAAAGC
  GCTTCTTTTT CTTACACGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147565145	ENSMUSSNP1980153	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48537491					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136038919 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15109	CpG island 15109			within coordinates
Hnrnpr	heterogeneous nuclear ribonucleoprotein R			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367756	regulatory region 367756			within coordinates
Rr602347	regulatory region 602347			573 bp distal
Rr602348	regulatory region 602348			within coordinates
Tssr39700	transcription start site region 39700			661 bp downstream
Tssr39701	transcription start site region 39701			624 bp downstream
Tssr39702	transcription start site region 39702			554 bp downstream