rs48537483 SNP Detail

Summary

• ID
  rs48537483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138452205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA AAGCTTCAAG TGCAGAAGGA
  R
  GAGGAGTGTT CCGGGAATGG CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147655259	ENSMUSSNP4393404	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321376517	CHEV_4_138280809	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48537483					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138452205 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			mRNA-UTR
Rr602997	regulatory region 602997			1120 bp distal
Rr602998	regulatory region 602998			550 bp distal
Rr602999	regulatory region 602999			92 bp distal
Rr603000	regulatory region 603000			within coordinates
Rr603001	regulatory region 603001			442 bp proximal
Rr603002	regulatory region 603002			822 bp proximal
Tssr39875	transcription start site region 39875			388 bp upstream
Tssr44173	transcription start site region 44173			316 bp downstream
Tssr44174	transcription start site region 44174			368 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant