rs48535802 SNP Detail

Summary

• ID
  rs48535802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTTGC AAAACTAATC
  CCGTGGGTGG GCACACATAT GTCATCCCAG TTACCCAAAG GCTGGCATTG GAGAGTCTCA
  AATTCAAGGT CAGCCTGTGA AAATAGTGAG ACCTTAGCTC AAAAACTACT TAAAGGAAGC
  TTGGAATATT CCTCAGAGGT ATACACTTGC CTAGCATGTG CAAGACCCTG GCTTAGTCCT
  Y
  CAATCCTGCC TCCTAACTGT GTAGAATTTG AAATCTGTGT GAAATCATAT GAAACCCATA
  CTTTCAACCC CACTCCCCCC CCCAAAATCT TTATTTTCAT GCATACTTTG TGAAAACAAA
  TTGAGACAAA ATTAAATTCC TGTCCACCTG AGAGAGAAAG ACATCTTTCC CCACTGCTCT
  GGCATCTGTG TGCATGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320429661	CHEV_2_101479069	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48535802					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469257 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	699 bp proximal
Tssr25364	transcription start site region 25364	1190 bp downstream
Tssr25365	transcription start site region 25365	1314 bp downstream